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u133a genechip  (Thermo Fisher)


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    Structured Review

    Thermo Fisher u133a genechip
    U133a Genechip, supplied by Thermo Fisher, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/u133a+genechips/nct01046825-7-18-18
    Average 90 stars, based on 1 article reviews
    u133a genechip - by Bioz Stars, 2026-09
    90/100 stars

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    Related Articles

    Gene Expression:

    Article Title: HIF1α-mediated transactivation of WTAP promotes AML cell proliferation via m 6 A-dependent stabilization of KDM4B mRNA.
    Article Snippet: Hypoxia inducible factor 1α (HIF1α) is abnormally overexpressed in t(8;21) acute myeloid leukemia (AML) and functions as an oncogene through transactivating DNA methyltransferase 3 alpha leading to DNA hypermethylation.. However, it remains unclear whether HIF1α influences RNA N-methyladenosine (mA) methyltransferases.. Here, we show that HIF1α promotes the expression of Wilms tumor 1-associated protein (WTAP), a main component of the mA methyltransferase complex, markedly alters the transcriptome-wide mA distribution and enhances cell proliferation in t(8;21) AML.

    Article Title: Transcriptional networks in plasmacytoid dendritic cells stimulated with synthetic TLR 7 agonists
    Article Snippet: .. To this end, we evaluated global gene expression changes after stimulation of human pDC of greater than 99% purity with the TLR7 agonist 3M-852A, and the TLR7/8 agonist 3M-011 using Affymetrix U133A GeneChips. ..

    Article Title: Abstract
    Article Snippet: Methods: Gene expression profiles (GEP) from Affymetrix U133A Genechips were contrasted between HG 1 (low grade) and 3 (high grade) tumours using a training set of 64 estrogen receptor (ER)-positive breast cancer samples. .. Methods: Gene expression profiles (GEP) from Affymetrix U133A Genechips were contrasted between HG 1 (low grade) and 3 (high grade) tumours using a training set of 64 estrogen receptor (ER)-positive breast cancer samples. ..

    Expressing:

    Article Title: Abstract
    Article Snippet: Using Affymetrix U133A GeneChips, we have identified 131 up-regulated genes and 156 down-regulated genes whose steady state expression levels differed by at least 3-fold between TAM-r cells and their TAM-sensitive (TAM-s) controls (Scott et al ., submitted). .. Using Affymetrix U133A GeneChips, we have identified 131 up-regulated genes and 156 down-regulated genes whose steady state expression levels differed by at least 3-fold between TAM-r cells and their TAM-sensitive (TAM-s) controls (Scott et al ., submitted). ..

    Article Title: Specific and nontoxic silencing in mammalian cells with expressed long dsRNAs
    Article Snippet: Biotinylated cRNA was synthesized from total RNA (Enzo, Farmingdale, NY). .. Following processing according to the Affymetrix GeneChip Expression Analysis Technical Manual (Affymetrix, Santa Clara, CA), the labeled cRNA was hybridized to Affymetrix U133A GeneChips and the resulting expression levels were quantified. .. Comparative analysis of the two samples was performed with the statistical algorithm of MAS 5.0 software (Affymetrix) by scaling at fixed target intensity of 150, a fold change of 1.5 (approximate signal log ratio of 0.6) and P -value < 0.01.

    Synthesized:

    Article Title: Role of Enzymic Antioxidants in Mediating Oxidative Stress and Contrasting Wound Healing Capabilities in Oral Mucosal/Skin Fibroblasts and Tissues.
    Article Snippet: .. Briefly, first strand cDNA was synthesized from 5 mg total RNA using a T7-(dT)24 primer (Genset Corporation, La Jolla, CA, USA) and reverse-transcribed using a Superscript DoubleStranded cDNA Synthesis Kit (ThermoFisher Scientific). cDNA was purified, and the subsequent in vitro transcription reaction was performed using a Bioarray Kit (Enzo Life Sciences, Exeter, UK) to generate biotinylated cRNA in the presence of T7 RNA polymerase and a biotinylated nucleotide analog/ribonucleotide mix for cRNA amplification and biotin labeling. cRNA was subsequently fragmented and hybridized to AffymetrixTM U133A GeneChips, containing B23 500 sequences derived from the GenBankTM database. ..

    Reverse Transcription:

    Article Title: Role of Enzymic Antioxidants in Mediating Oxidative Stress and Contrasting Wound Healing Capabilities in Oral Mucosal/Skin Fibroblasts and Tissues.
    Article Snippet: .. Briefly, first strand cDNA was synthesized from 5 mg total RNA using a T7-(dT)24 primer (Genset Corporation, La Jolla, CA, USA) and reverse-transcribed using a Superscript DoubleStranded cDNA Synthesis Kit (ThermoFisher Scientific). cDNA was purified, and the subsequent in vitro transcription reaction was performed using a Bioarray Kit (Enzo Life Sciences, Exeter, UK) to generate biotinylated cRNA in the presence of T7 RNA polymerase and a biotinylated nucleotide analog/ribonucleotide mix for cRNA amplification and biotin labeling. cRNA was subsequently fragmented and hybridized to AffymetrixTM U133A GeneChips, containing B23 500 sequences derived from the GenBankTM database. ..

    cDNA Synthesis:

    Article Title: Role of Enzymic Antioxidants in Mediating Oxidative Stress and Contrasting Wound Healing Capabilities in Oral Mucosal/Skin Fibroblasts and Tissues.
    Article Snippet: .. Briefly, first strand cDNA was synthesized from 5 mg total RNA using a T7-(dT)24 primer (Genset Corporation, La Jolla, CA, USA) and reverse-transcribed using a Superscript DoubleStranded cDNA Synthesis Kit (ThermoFisher Scientific). cDNA was purified, and the subsequent in vitro transcription reaction was performed using a Bioarray Kit (Enzo Life Sciences, Exeter, UK) to generate biotinylated cRNA in the presence of T7 RNA polymerase and a biotinylated nucleotide analog/ribonucleotide mix for cRNA amplification and biotin labeling. cRNA was subsequently fragmented and hybridized to AffymetrixTM U133A GeneChips, containing B23 500 sequences derived from the GenBankTM database. ..

    Purification:

    Article Title: Role of Enzymic Antioxidants in Mediating Oxidative Stress and Contrasting Wound Healing Capabilities in Oral Mucosal/Skin Fibroblasts and Tissues.
    Article Snippet: .. Briefly, first strand cDNA was synthesized from 5 mg total RNA using a T7-(dT)24 primer (Genset Corporation, La Jolla, CA, USA) and reverse-transcribed using a Superscript DoubleStranded cDNA Synthesis Kit (ThermoFisher Scientific). cDNA was purified, and the subsequent in vitro transcription reaction was performed using a Bioarray Kit (Enzo Life Sciences, Exeter, UK) to generate biotinylated cRNA in the presence of T7 RNA polymerase and a biotinylated nucleotide analog/ribonucleotide mix for cRNA amplification and biotin labeling. cRNA was subsequently fragmented and hybridized to AffymetrixTM U133A GeneChips, containing B23 500 sequences derived from the GenBankTM database. ..

    Article Title: Image-Based Assessment of Growth and Signaling Changes in Cancer Cells Mediated by Direct Cell-Cell Contact
    Article Snippet: .. RNA lysis buffer was added into both fractions and RNA was purified using a Qiagen miniRNA kit (Valencia, CA). mRNA samples were prepared and processed for transcriptional profiling using the Affymetrix U133A GeneChips as described previously . ..

    In Vitro:

    Article Title: Role of Enzymic Antioxidants in Mediating Oxidative Stress and Contrasting Wound Healing Capabilities in Oral Mucosal/Skin Fibroblasts and Tissues.
    Article Snippet: .. Briefly, first strand cDNA was synthesized from 5 mg total RNA using a T7-(dT)24 primer (Genset Corporation, La Jolla, CA, USA) and reverse-transcribed using a Superscript DoubleStranded cDNA Synthesis Kit (ThermoFisher Scientific). cDNA was purified, and the subsequent in vitro transcription reaction was performed using a Bioarray Kit (Enzo Life Sciences, Exeter, UK) to generate biotinylated cRNA in the presence of T7 RNA polymerase and a biotinylated nucleotide analog/ribonucleotide mix for cRNA amplification and biotin labeling. cRNA was subsequently fragmented and hybridized to AffymetrixTM U133A GeneChips, containing B23 500 sequences derived from the GenBankTM database. ..

    Amplification:

    Article Title: Role of Enzymic Antioxidants in Mediating Oxidative Stress and Contrasting Wound Healing Capabilities in Oral Mucosal/Skin Fibroblasts and Tissues.
    Article Snippet: .. Briefly, first strand cDNA was synthesized from 5 mg total RNA using a T7-(dT)24 primer (Genset Corporation, La Jolla, CA, USA) and reverse-transcribed using a Superscript DoubleStranded cDNA Synthesis Kit (ThermoFisher Scientific). cDNA was purified, and the subsequent in vitro transcription reaction was performed using a Bioarray Kit (Enzo Life Sciences, Exeter, UK) to generate biotinylated cRNA in the presence of T7 RNA polymerase and a biotinylated nucleotide analog/ribonucleotide mix for cRNA amplification and biotin labeling. cRNA was subsequently fragmented and hybridized to AffymetrixTM U133A GeneChips, containing B23 500 sequences derived from the GenBankTM database. ..

    Labeling:

    Article Title: Role of Enzymic Antioxidants in Mediating Oxidative Stress and Contrasting Wound Healing Capabilities in Oral Mucosal/Skin Fibroblasts and Tissues.
    Article Snippet: .. Briefly, first strand cDNA was synthesized from 5 mg total RNA using a T7-(dT)24 primer (Genset Corporation, La Jolla, CA, USA) and reverse-transcribed using a Superscript DoubleStranded cDNA Synthesis Kit (ThermoFisher Scientific). cDNA was purified, and the subsequent in vitro transcription reaction was performed using a Bioarray Kit (Enzo Life Sciences, Exeter, UK) to generate biotinylated cRNA in the presence of T7 RNA polymerase and a biotinylated nucleotide analog/ribonucleotide mix for cRNA amplification and biotin labeling. cRNA was subsequently fragmented and hybridized to AffymetrixTM U133A GeneChips, containing B23 500 sequences derived from the GenBankTM database. ..

    Article Title: Specific and nontoxic silencing in mammalian cells with expressed long dsRNAs
    Article Snippet: Biotinylated cRNA was synthesized from total RNA (Enzo, Farmingdale, NY). .. Following processing according to the Affymetrix GeneChip Expression Analysis Technical Manual (Affymetrix, Santa Clara, CA), the labeled cRNA was hybridized to Affymetrix U133A GeneChips and the resulting expression levels were quantified. .. Comparative analysis of the two samples was performed with the statistical algorithm of MAS 5.0 software (Affymetrix) by scaling at fixed target intensity of 150, a fold change of 1.5 (approximate signal log ratio of 0.6) and P -value < 0.01.

    Derivative Assay:

    Article Title: Role of Enzymic Antioxidants in Mediating Oxidative Stress and Contrasting Wound Healing Capabilities in Oral Mucosal/Skin Fibroblasts and Tissues.
    Article Snippet: .. Briefly, first strand cDNA was synthesized from 5 mg total RNA using a T7-(dT)24 primer (Genset Corporation, La Jolla, CA, USA) and reverse-transcribed using a Superscript DoubleStranded cDNA Synthesis Kit (ThermoFisher Scientific). cDNA was purified, and the subsequent in vitro transcription reaction was performed using a Bioarray Kit (Enzo Life Sciences, Exeter, UK) to generate biotinylated cRNA in the presence of T7 RNA polymerase and a biotinylated nucleotide analog/ribonucleotide mix for cRNA amplification and biotin labeling. cRNA was subsequently fragmented and hybridized to AffymetrixTM U133A GeneChips, containing B23 500 sequences derived from the GenBankTM database. ..

    Lysis:

    Article Title: Image-Based Assessment of Growth and Signaling Changes in Cancer Cells Mediated by Direct Cell-Cell Contact
    Article Snippet: .. RNA lysis buffer was added into both fractions and RNA was purified using a Qiagen miniRNA kit (Valencia, CA). mRNA samples were prepared and processed for transcriptional profiling using the Affymetrix U133A GeneChips as described previously . ..



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    Information on the Datasets Used for the Survival Analysis
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    Image Search Results


    Profile of genes with differential expression acquired using an Affymetrix array (U133A) in an induced-radiation and -estrogen experimental breast cancer model, comparing genes such as ( A ) the TNF alpha-induced protein 6 gene ( TNFAIP6 ), ( B ) the interferon-related developmental regulator 1 gene ( IFRD1 ), ( C ) the Interferon-Induced Transmembrane protein 2 gene ( IFITM2 ), ( D ) the Interferon-Gamma Receptor 1 gene ( IFNGR1 ), ( E ) the Interferon Regulatory Factor 6 gene ( IRF6 ), and ( F ) the Nuclear Factor Interleukin 3-regulated gene ( NFIL3 ) in the following cell lines: MCF-10F/estrogen (Ct/E), Control/Alpha3 (Ct/A3), estrogen/Alpha5 (E/A5), Alpha3/Alpha5 (A3/A5), Alpha5/Tumor2 (A5/T2), and Alpha3/Tumor2 (A3/T2). The graphs were obtained from a gene expression cluster dendrogram repository from our laboratory for this article.

    Journal: Biology

    Article Title: Genes Associated with the Immune System Affected by Ionizing Radiation and Estrogen in an Experimental Breast Cancer Model

    doi: 10.3390/biology13121078

    Figure Lengend Snippet: Profile of genes with differential expression acquired using an Affymetrix array (U133A) in an induced-radiation and -estrogen experimental breast cancer model, comparing genes such as ( A ) the TNF alpha-induced protein 6 gene ( TNFAIP6 ), ( B ) the interferon-related developmental regulator 1 gene ( IFRD1 ), ( C ) the Interferon-Induced Transmembrane protein 2 gene ( IFITM2 ), ( D ) the Interferon-Gamma Receptor 1 gene ( IFNGR1 ), ( E ) the Interferon Regulatory Factor 6 gene ( IRF6 ), and ( F ) the Nuclear Factor Interleukin 3-regulated gene ( NFIL3 ) in the following cell lines: MCF-10F/estrogen (Ct/E), Control/Alpha3 (Ct/A3), estrogen/Alpha5 (E/A5), Alpha3/Alpha5 (A3/A5), Alpha5/Tumor2 (A5/T2), and Alpha3/Tumor2 (A3/T2). The graphs were obtained from a gene expression cluster dendrogram repository from our laboratory for this article.

    Article Snippet: Then, in 2013, Calaf et al. [ ] used the model with the Affymetrix HG-U133A Plus 2.0 GeneChip to evaluate the process of addition as one of the processes of breast carcinogenesis in the following cell lines derived from the original model in 2000 [ ] ( ): (a) Ct, the parent MCF-10F cell line that was not exposed to radiation or estrogen, (b) The E cell line, MCF-l0F, consistently treated with 17β-estradiol at 1 × 10 −8 mol/L, which did not form mammary tumors in nude mice, (c) the A3 cell line, MCF-10F, exposed to double doses of 60/60 cGy α particles, a malignant (since it formed colonies in agar) and non-tumorigenic cell line, (d) the A5, MCF-10F cells, exposed to double doses of 60/60 cGy in the presence of estrogen, a malignant and tumorigenic cell line, i.e., forming colonies in agar and being able to initiate tumors, and (e) the T2 cell line, which was derived from the mammary tumors that developed in nude mice after being injected with the A5 cell line.

    Techniques: Expressing, Control

    Information on the Datasets Used for the Survival Analysis

    Journal: World Journal of Oncology

    Article Title: ACTR10 Overexpression Facilitates the Progression and Tyrosine Kinase Inhibitor Resistance in Hepatocellular Carcinoma

    doi: 10.14740/wjon1944

    Figure Lengend Snippet: Information on the Datasets Used for the Survival Analysis

    Article Snippet: E-TABM-36 , 41 , Affymetrix HG-U133A GeneChips arrays.

    Techniques: